Economy picking
Sometimes you'll want to break the rigid down-on-the-beat-up-off-the-beat pattern to simplify playing when a phrase changes from one string to another, such as in this phrase:
This is similar to what electric guitarists call "economy picking" or "sweeping."
There are even occasions when a three-string sweeping can be useful, like in the last two bars of "Harvest Home":

I don't use this technique very much myself, since it's usually hard to get back to the regular picking pattern afterwards. Often you don't solve technical problems this way, you just postpone them. This is much a matter of personal taste/style though, and even a die-hard alternate picker like me would use and recommend economy picking in phrases like the two above.
Besides, economy picking isn't only there for technical reasons. When you use it, you have to even out the difference in emphasis between down- and upstrokes, creating a smoother more flowing phrasing. Whether that is a good or bad thing depends on the occasion and you personal preferences. The best thing is of course to master both techniques well enough to be able to switch between them as needed.
Triplets and triple time rhythm
The strict alternating stroke system works when there's one or two notes on each beat. But when we play triplets and when you play jigs and other tunes in 6/8, 9/8 or 12/8 time, we have three notes in each beat. How d we do that?I've covered the basics of triplet playing in the accompaniment section, and solo playing is very similar: Play each three note group down-up-down (some prefer down-down-up).
There are some differences though. The "prepared triplet" and "upstroke after the triplet" methods aren't much used in solo playing. When you play a triplet in a hornpipe or reel or similar, you definitely want it properly emphasized. It's hard get that with an upstroke afterwards, and impossible with a prepared triplet. In triple time tunes they simply aren't don't work very often. You need a passage with slower picking before or after the triplet for the two techniques to make sense and you don't get that very much in a jig.
The "two triplets" method isn't that useful for solo playing either. It works well for isolated phrases like the last two bars of the Galway Hornpipe:

but if you're trying to play alternate stroke throughout a jig, it'll easily end up sounding like a seasick waltz instead, and you don't want that!
Here are some triplet exercises you can use to develop your skills.